PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 536aa    MW: 55816 Da    PI: 8.5912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-056688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_016444409.1 66 FVCEICSKGFQRDQNLQLHRRGH 88
                    89*******************88 PP

2zf-C2H214.40.00011142164123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+Lk H + +
  XP_016444409.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-76588No hitNo description
Gene3DG3DSA:3.30.160.606.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0366688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355230107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-7137162No hitNo description
PROSITE profilePS501578.746142170IPR007087Zinc finger, C2H2
SMARTSM0035566142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MPADPDNSSA MNDSTGSGEV SVSSSGNQVP PQKESAKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKRVYVCP ETTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DVLAQESAKA VPEKPPNVTN EEPKTQAIAA SSSPPPPTPM ASPPAAESQP  240
LPPALPPPAA PTTLTPAAIP PSTTVISFVS SVQNPELREN PNPNSTGTAG KQVMEETTAL  300
ASLTGSCSSS SSSCSNGSTS SNVFGSLFAS STASGSMPSQ APGFTDLFRA VAPERVPEMA  360
PPSSAEPISL CLAMSHGSSI FRPAGQERRQ YAPVPQPAMS ATALLQKAAQ MGAAATSSSL  420
LRGLGVMSSS SPSNGQQEWS GRPMETNGAS LAAGLGLGLP CDAGSGLKEL MLGTPSVFGP  480
KHPTLDLLGL GMAASGGPSP GLSALLTSMG SNLDMATAAG SFGSGDFSGK DLGRNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803272.10.0PREDICTED: putative uncharacterized protein FLJ22184
RefseqXP_016444409.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-175IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM1AYI40.0M1AYI4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000330390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2